Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MSKEVLSKSKEKMEKAEQALTRQLGTIRAGRANASLLDRLSVDYYGAATPVNQMASISVPEARMLLITPYDKTILGEIEKAILKSDLGLTPNNDGSVLRLSIPQLTEERRKELVKEVKKEAEEAKVAVRNIRREANEELKKLEKNGDITEDDLRSYGEDVQKLTDESIKNIDSITKDKEAEILEV
3J0D Chain:J ((4-184))
--KELYAETRSHMQKSLEVLEHNLAGLRTGRANPALLLHLKVEYYGAHVPLNQIATVTAPDPRTLVVQSWDQNALKAIEKAIRDSDLGLNPSNKGDALYINIPPLTEERRKDLVRAVRQYAEEGRVAIRNIRREALDKLKKLAKELHLSEDETKRAEAEIQKITDEFIAKADQLAEKKEQEIL--
General information:
TITO was launched using:
RESULT:
Template:
3J0D.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -42514 for 1230 contacts (-34.6/contact) +
2D Compatibility (PS) -20023 + (NN) -11086 + (LL) 476
1D Compatibility (HY) -14000 + (ID) 4250
Total energy: -91397.0 ( -74.31 by residue)
QMean score : 0.645
(partial model without unconserved sides chains):
PDB file :
Tito_3J0D.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-3J0D-query.scw
PDB file :
Tito_Scwrl_3J0D.pdb
: