Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
VQQINWKKNVSFRSGSPAFTLLETILSITIILSISLLIPLFFQCYNKTIQLSNIDQTTEWQLFLIQTRLELEKATNIQIDGNKLSFSNGKDLITYSKYNDLVRRQVNGKGHEPLLTNVKDYQLIKKEKQLHLTVQDSNTQIYTSVFALPEVVSNP
2LX0 Chain:A ((4-28))
-------------------TIWEVIAGLVALLTFLAFGFWLFKY---------------------------------------------------------------------------------------------------------------
General information:
TITO was launched using:
RESULT:
Template:
2LX0.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -15200 for 116 contacts (-131.0/contact) +
2D Compatibility (PS) -2198 + (NN) 4030 + (LL) 8616
1D Compatibility (HY) -3200 + (ID) 250
Total energy: -8202.0 ( -70.71 by residue)
QMean score : 0.178
(partial model without unconserved sides chains):
PDB file :
Tito_2LX0.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-2LX0-query.scw
PDB file :
Tito_Scwrl_2LX0.pdb
: