Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
| Query sequence | MSKLTKIQETLGKEKIEAVLVTSEFNRRYVSGFTGTSGVALILPEKAYFVTDFRYTEQAAKQAEGYEIVQHTGPIFDTVEDLLIKNDTKTLHFEADYVTVSEFKQMERVFNRQLIPLTGFFEEMRKVKTASELKAIRTACDIADAAFAHIIQFIKPGMAEIEVSNELEFFMRRAGATSSSFDTIVASGIRSALPHGVASDKKIEVGDFVTMDYGCYYDGYCSDMTRTIAV-GEPAEKLKEIYQITLDAQLKVIDSLKPGMTGIEADA-IAR-----------------DYISSFGYGDAFGHSLGHGIGLEIHEGPNLSFKSPQKLEVGHVVTDEPGIYLP----------GIGGVRIEDDLLITETGNEIL----IHSPKELIIL |
| 1WLR Chain:A ((162-430)) | -----------------------------------------------------------------------------------------------------------------MIDWRPVVHEMRLFKSPEEIAVLRRAGEITAMAHTRAMEKCRPGMFEYHLEGEIHHEFNRHGARYPSYNTIVGSGENGCILHYTENECEMRDGDLVLIDAGCEYKGYAGDITRTFPVNGKFTQAQREIYDIVLESLETSLRLYRPGTSILEVTGEVVRIMVSGLVKLGILKGDVDELIAQNAHRPFFMHGLSHWLGLDVHDVGVYGQDRSRILEPGMVLTVEPGLYIAPDAEVPEQYRGI-GIRIEDDIVITETGNENLTASVVKKPEEI--- |
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General information:
TITO was launched using:
| RESULT:
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Template: 1WLR.pdb
Alignment : align.pir
Tito was launched with SMD and SCWRL
Tito text output
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3D Compatibility (PKB) -95711 for 1937 contacts (-49.4/contact) +
2D Compatibility (PS) -25571 + (NN) -12602 + (LL) 9588
1D Compatibility (HY) -16400 + (ID) 4200
Total energy: -144896.0 ( -74.80 by residue)
QMean score : 0.432
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