Modeling by threading (Tito software) Unconserved sides chains calculation (Scwrl software) Evaluation (QMean software)
Input alignment information:
Query sequence | MTKWNVYLTKGEYEPWWFFEEWETSIQEDFSFSDKEAAFLKYQELAEALLSNYPKHQTKKDCLLAAWNEEEVEYCEDCEDDIQTFHGLILFFEGEV----YQPTPEEKETIFKRVLTFA |
3MDB Chain:C ((68-136)) | ---------------------------------------------------NIPQVSKVKSVRLDAWEEAQVEFMASHGNDAARAR-----FESKVPSFYYRPTPSD------------ |
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General information:
TITO was launched using:
| RESULT:
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Template: 3MDB.pdb
Alignment : align.pir
Tito was launched with SMD and SCWRL
Tito text output
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3D Compatibility (PKB) 2161 for 174 contacts (12.4/contact) +
2D Compatibility (PS) -4920 + (NN) -651 + (LL) 6484
1D Compatibility (HY) -2400 + (ID) 850
Total energy: -176.0 ( -1.01 by residue)
QMean score : 0.413
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