Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
VNDIIHDYLLKN--IPKSSPFFKELEAYAKENEVPIMEPDSLYCLLQ--ILDIQKPKRILELGTAIGYSALKMADKLPD-AEIITVERDEERYEQAIHNIQRYGASDRVKVLLTDAIEGAEEIL----AHGPFDAIFIDAAKAQYEKFFHIYTVSLAENGVIYSDNVLFKGLALDMTPEKQRKLRVARK-MRHFNDFLVTHPDFETTTIPLGDGLSISKRKKTGGVS
3C3Y Chain:A ((23-235))
-------YILRTSVYPREAGFLKELREANESHPDSYMSTSPLAGQLMSFVLKLVNAKKTIEVGVFTGYSLLLTALSIPDDGKITAIDFDREAYEIGLPFIRKAGVEHKINFIESDAMLALDNLLQGQESEGSYDFGFVDADKPNYIKYHERLMKLVKVGGIVAYDNTLWGGTVAQPESEVPDFMKENREAVIELNKLLAADPRIEIVHLPLGDGITFCRR-------
General information:
TITO was launched using:
RESULT:
Template:
3C3Y.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -88194 for 1676 contacts (-52.6/contact) +
2D Compatibility (PS) -21714 + (NN) -10409 + (LL) 412
1D Compatibility (HY) -11600 + (ID) 2800
Total energy: -134305.0 ( -80.13 by residue)
QMean score : 0.562
(partial model without unconserved sides chains):
PDB file :
Tito_3C3Y.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-3C3Y-query.scw
PDB file :
Tito_Scwrl_3C3Y.pdb
: