Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MAEEHNHNHE-EENIIWITNEEGKEEAYEILFDFDSEDFD-KSYVLYFPAGKGEDEEIEILA----SSYIQDEEGKQGQLKPVETDEEWDMIEEILATFLADED-EE---------
4Q28 Chain:A ((2-111))
-GHHHHHHSHMRRSIVVIHPDTGRELSPEEAHRAGLIDWNMF---VKLRSQECDWEEISVKGPNGESSVIHDR--KSGKKFSIEEALQSGRLTPAQYDRYVNKDMSIQELAVLVSG
General information:
TITO was launched using:
RESULT:
Template:
4Q28.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) 35169 for 521 contacts (67.5/contact) +
2D Compatibility (PS) -9661 + (NN) 1827 + (LL) 396
1D Compatibility (HY) -400 + (ID) 950
Total energy: 26381.0 ( 50.64 by residue)
QMean score : 0.150
(partial model without unconserved sides chains):
PDB file :
Tito_4Q28.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-4Q28-query.scw
PDB file :
Tito_Scwrl_4Q28.pdb
: