Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MTQ-VTFKHNPVTLVGTERKVGDKAPNFTVVNRDLEEVTLHDYDGKVRLISVVPSIDTSVCSTQTRKFNEEASNLDNTVVLTISVDLPFAQKKWCAAEGLPNAITLSDHRDLSFGEAYGVIMKE--LR-LLARSVFVVNAVGEIVYTEVVPEGSDHPNYEAAIEAAKKA
4AF2 Chain:A ((1-167))
MSQTVHFQGNPVTVANSIPQAGSKAQTFTLVAKDLSDVTLGQFAGKRKVLNIFPSIDTGVSAASVRKFNQLATEIDNTVVLCISADLPFAQSRFCGAEGLNNVITLSTFRNAEFLQAYGVAIADGPLKGLAARAVVVIDENDNVIFSQLVDEITTEPDYEAALAVLK--
General information:
TITO was launched using:
RESULT:
Template:
4AF2.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -77018 for 1297 contacts (-59.4/contact) +
2D Compatibility (PS) -17773 + (NN) -2948 + (LL) 208
1D Compatibility (HY) -15600 + (ID) 3800
Total energy: -116931.0 ( -90.15 by residue)
QMean score : 0.636
(partial model without unconserved sides chains):
PDB file :
Tito_4AF2.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-4AF2-query.scw
PDB file :
Tito_Scwrl_4AF2.pdb
: