Modeling by threading (Tito software) Unconserved sides chains calculation (Scwrl software) Evaluation (QMean software)
Input alignment information:
Query sequence | MAKTIFYFSYRKTEELHAKAKELKKITTDYGYELTDDYQKANVIISIGGDGAFLKSVRETGFRQDCL-YAGIALTEQLGQYCDFHINQLDEIIKAAIEDRWLVRRYPTI-----YGTVNNTKAFYVLNEFNIRSSIIRTLTMDLYINDSHFETFRGDGMVISTPTGSTAYNKSVNGSIVDPLLPSMQVSELASINNNKFRTLGSSFILSPKRKLRIEIASEEGNNEFPMIGMDSEALSIQHVHEVNLEVGDRFINIIKLPKNSFWDKVKRNFL |
3V8N Chain:A ((27-262)) | -------------------------------YDMEYDDVEPEIVISIGGDGTFLSAFHQYEERLDEIAFIGIH-TGHLGFYADWRPAEADKLVKLLAKGEYQKVSYPLLKTTVKYG----EATYLALNESTVKSSG-GPFVVDVVINDIHFERFRGDGLCMSTPSGTTAYNKSLGGALMHPSIEAMQLTEMASINN---RTIGSPLVF-PKHHV---VSLQPVNDKDFQISVDHLSILHRDVQEIRYEVSAKKIHFARFRSFPFWRRVHDSFI |
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General information:
TITO was launched using:
| RESULT:
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Template: 3V8N.pdb
Alignment : align.pir
Tito was launched with SMD and SCWRL
Tito text output
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3D Compatibility (PKB) -85018 for 1659 contacts (-51.2/contact) +
2D Compatibility (PS) -23859 + (NN) -2013 + (LL) 3672
1D Compatibility (HY) -18800 + (ID) 4050
Total energy: -130068.0 ( -78.40 by residue)
QMean score : 0.310
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