Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
| Query sequence | MELIKGNIASPKGFYADGKHAGLKRK-RNDIGWIYSEVPANAAAVYTMNQMQAAPIFVTKDSFQSNAKLQAIIVNSGNANACTGNQGMLDALAMRAQTAEKLEIPLDSVAVASTGIIGDMLPMDKINAGIEMLEKQTGNAADFEEA---ILTTDTFQKQISFQTEIGGRKVTMSGVAKGSGMIHPNMATMLAFITTDAAI-PAELLQKLLKIKVDKTFNQITVDGDTSTNDMVVVMANGCAENPMLQEGTADFAKFADMFQAVTEHLAKSIARDGEGATKLIEVQVNGATKTEDARMIAKKIVSSSLVKTAAFGGDGNWGRIICAIGYSGGRFAPD--NITIKIGGIEILNHSSQTIYNQQALDA----YLEEEHIIIEVDLHIGLESGTAWGCDLSYEYVKINACYRT |
| 1VZ7 Chain:D ((8-390)) | ---------TPRGFVVHTAPVGLADDGRDDFTVLAS--PATVSAVFTRSRFAGPSVVLCREAV-ADGQARGVVVLARNANVATGLEGEENAREVREAVARALGLPEGEMLIASTGVIGRQYPMESIREHLKTLEWPAGEGG-FDRAARAIMTTDTRPKEV--RVSVGG--ATLVGIAKGVGMLEPDMATLLTFFATDARLDPAEQ-DRLFRRVMDRTFNAVSIDTDTSTSDTAVLFANGLA-------GEVDAGEFEEALHTAALALVKDIASDGEGAAKLIEVQVTGARDDAQAKRVGKTVVNSPLVKTAVHGCDPNWGRVAMAIGKCSDDTDIDQERVTIRFGEVEVYPP-------DDALRAAVAEHLRGDEVVIGIDLAIADGAFTVYGCDLTEGYVRLNSE--- |
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General information:
TITO was launched using:
| RESULT:
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Template: 1VZ7.pdb
Alignment : align.pir
Tito was launched with SMD and SCWRL
Tito text output
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3D Compatibility (PKB) -174495 for 3272 contacts (-53.3/contact) +
2D Compatibility (PS) -39392 + (NN) -15811 + (LL) 2704
1D Compatibility (HY) -24800 + (ID) 7100
Total energy: -258894.0 ( -79.12 by residue)
QMean score : 0.401
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