Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
ISKDMLVNDGIRAREVRLIDQDGEQLGVKSKIDALQIAEKANLDLVLVAPTAKPPVARIMDYGKFRFEQQKKDKEARKNQKVIVMKEVRLSPTIDE-HDFDTKLRNARKFLE-KGDKV-KCSIRFKGRAITHKEIGQKVLDRFAKACEDLCTIEQRPKMDGRSMFLVLAPLHEK
2JVF Chain:A ((14-87))
--------------------------------------------------------------------------------------EIEIDIRVSTGKELERALQELEKALARAGARNVQITISAE-----NDEQAKELLELIARLLQKLGYKDINVRVNGTEVK---------
General information:
TITO was launched using:
RESULT:
Template:
2JVF.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -5905 for 362 contacts (-16.3/contact) +
2D Compatibility (PS) -7724 + (NN) -1564 + (LL) 8240
1D Compatibility (HY) -3200 + (ID) 550
Total energy: -10703.0 ( -29.57 by residue)
QMean score : 0.683
(partial model without unconserved sides chains):
PDB file :
Tito_2JVF.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-2JVF-query.scw
PDB file :
Tito_Scwrl_2JVF.pdb
: