Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
| Query sequence | MKTFQLVATAASGLEAIVGKEVARLGYDPKVENGKVYFEGDLSAIARANLWLRVADRVKIVVGVFKATTFDELFEKTKALPWEDYLPLDAQFPVAGKSVKSTLYSVPDCQAIVKKAIVNRVSEKYRRSGRLMETGALFKLEVSILKDEVTLTIDTSGAGLHKRGYRLAQGSAPIKETMAAALVLLTSWHPDRPFYDPVCGSGTIPIEAALIGQNIAPGFNR-EFVSETWDWMPKQIWADARQEAED-----LANYDQPLNIIGGDIDARLIEIAKQNAVEAGLGDLITFRQLQVADFQT---EDEYGVVVANPPYGERLEDEEAVRQLYREMG-IVYKRMPTWSVYVLTSYELFEEVYGKKATKKRKLYNGYLRTDLYQYWGPRKPRPKKED |
| 3V8V Chain:B ((29-407)) | -----------------------------QVVQGGVHFKGDTRLVYQSLMWSRLASRIMLPLGEC--YSDLDLYLGVQAINWTEMFNPGATFAVH--------RNSQYGAMKVKDAIVDAFTR---PRPNVDRDAPDIRVNVW-------IALDLSGDGLHLRGYRD----APIKETLAAAIVMRSGWQPGTPLLDPMCGSGTLLIEAAMLATDRAPGLHRGRWGFSGWAQHDEAIWQEVKAEAQTRARKGLAEYSS--HFYGSDSDARVIQRARTNARLAGIGELITFEVKDVAQLTNPLPKGPYGTVLSNPPY-----SEPALIALHSLLGRIMKNQFGGWNLSLFSASPDLLSCLQLRADKQYKAKNGPL------------------- |
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General information:
TITO was launched using:
| RESULT:
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Template: 3V8V.pdb
Alignment : align.pir
Tito was launched with SMD and SCWRL
Tito text output
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3D Compatibility (PKB) -139194 for 2286 contacts (-60.9/contact) +
2D Compatibility (PS) -32828 + (NN) -11810 + (LL) 4812
1D Compatibility (HY) -19200 + (ID) 5300
Total energy: -203520.0 ( -89.03 by residue)
QMean score : 0.523
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