Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)



Input alignment information:
Query sequenceMTKKICIAIDGPAAAGKSTVAKIVAKKLRFVYIDTGAMYRAVTYIALKNNIAYEDEKAIAALLQKTVIR-FEPGEVQQVFVGSENVTEVIRSIEVTNHVSIVAAHPSIREALQERQQVFATEGGIVMDGRDIGTAVLPNAELKIFLLASVEERAERRYKENMAKGFTGDLDQLKKEIEERDHLDYTRTHSPLKKADDAIEVDTTSMSIDQVANKILSLAELKINN
3AKD Chain:A ((5-204))------VTIDGPSASGKSSVARRVAAALGVPYLSSGLLYRAAAFLALRAGVDPGDEEGLLALLEGLGVRLLAQAEGNRVLADGEDLTSFLHTPEVDRVVSAVARLPGVRAWVNRRLKEVPPP--FVAEGRDMGTAVFPEAAHKFYLTASPEVRAWRRARERPQA-----YEEVLRDLLRRD------S----APAPDALVLDTGGMTLDEVVAWVLA--------


General information:
TITO was launched using:
RESULT:

Template: 3AKD.pdb
Alignment : align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -109746 for 1569 contacts (-69.9/contact) +
2D Compatibility (PS) -20825 + (NN) -7525 + (LL) 1216
1D Compatibility (HY) -12800 + (ID) 3500
Total energy: -153180.0 ( -97.63 by residue)
QMean score : 0.545

(partial model without unconserved sides chains):
PDB file : Tito_3AKD.pdb:





(Unconserved sides chains are recalculated) :
Sequence: align-3AKD-query.scw
PDB file : Tito_Scwrl_3AKD.pdb: