Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
| Query sequence | ----------------------------------VNILHIEWKTRIKSLVV------WAVVVIVIL----------GVFMAFFPSMQSSGMQDLVNTKMNALPQDMMKILHMDSMADLTNIDAYFAYVFQYIFIAACVYAALIGAQALIKEETDGTIEFLYAQPI-------TRSSLVFWK----------MIGNLLSFVAFWVITFLA-SVALVLFLKPSGVDGGNLVMELVRVFSSELLVAAV--FMSAGFMVSSVLRSAKQA--------SPVALALVFLTYILGIMAGLNDKVDFFKYFSPINYAIP--------------SEIMDKGITGTNALISCGVIVVMVAMTFVLYKKKDLKV----------------- |
| 1HTQ Chain:A ((101-468)) | SRDPRNIARKAENYLISTGIADTAYFGAEAEFYIFDSVSFDSRANGSFYEVDAISGWWNTGAATEADGSPNRGYKVRHKGGYFPVAPNDQYVDLRDKMLTNLINSGFILEKGHH-EVGSGGQAEINYQFNSLLHAADDMQLYKYIIKNTAWQNGKTVTFM-PKPLFGDNGSGMHCHQSLWKDGAPLMYDETGYAGLSDTARHYIGGLLHHAPSLLAFTNPT----VNSYKRLVPGYEAPINLVYSQRNRSACVRIPITGSNPKAKRLEFRSPDSSGNPYLAFSAMLMAGLDGIKNKIEPQAPVDKDLYELPPEEAASIPQTPTQLSDVIDRLEADHEYLTEGGVFTNDLIETWISFKRENEIEPVNIRPHPYEFALYYDV |
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General information:
TITO was launched using:
| RESULT:
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Template: 1HTQ.pdb
Alignment : align.pir
Tito was launched with SMD and SCWRL
Tito text output
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3D Compatibility (PKB) -141145 for 1699 contacts (-83.1/contact) +
2D Compatibility (PS) -25863 + (NN) 13412 + (LL) 72
1D Compatibility (HY) 12800 + (ID) 1050
Total energy: -141774.0 ( -83.45 by residue)
QMean score : -0.012
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