Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
| Query sequence | --------VSLYMLVSTFAVA----FIITVIGVPLFIPFLVKLKFGQSIRDEGPKMHEKKSGTPTMGAVVFIT--AMLISFLVFSFISGEVSAATWLLFIALA--------LFGALGFLDDYIKV--VQKRNLGLTSKQKFLGQVVISILFYLVYH-FNDFAETLNIPFTNIEVDLGWFFVIFILFWLVGFSNAVNLTDG---LDGLVSGLSVIAF-----SAFGVIAFYQEQMDVAIFCFAIVGGMLGFLLFNKNPAKIFMGDTGSLALGGSIAAISILVHQEWLLLLI--------------GIIFVIETAS-VILQVFYFKAT---GGKRIFRMTPIHHHFELGGWSEWRVVLTFWGIGLVGAII--SVCVVIF----------- |
| 1SQ9 Chain:A ((3-395)) | KVFIATANAGKAHDADIFSVSACNSFTVSCSGDGYLKVWDNKLLDNENPKDKSYSHFVHKSGLHHVDVLQAIERDAFELCLVATTSFSGD------LLFYRITREDETKKVIFEKLDLLDSDMKKHSFWALKWGASNSHRLVATDVKGTTYIWKFHPFADESNSLTLNWSPTLELQG---TVESPMTPSQFATSVDISERGLIATGFNNGTVQISELSTLRPLYNFESQHNNSNSIRSVKFSPQGSLLAIAHDSNSFGCITLYETEFGERIGSLSVPGEFAHSSWVMSLSFNDSGETLCSAGWDGKLRFWDVKTKERITTLNMHCDDIEIEEDILAVDEHGDSLAEPGVFDVKFLKKGWRSGM-GADLNESLCCVCLDRSIRWFREAG |
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General information:
TITO was launched using:
| RESULT:
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Template: 1SQ9.pdb
Alignment : align.pir
Tito was launched with SMD and SCWRL
Tito text output
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3D Compatibility (PKB) -328809 for 2406 contacts (-136.7/contact) +
2D Compatibility (PS) -33574 + (NN) 6566 + (LL) 1272
1D Compatibility (HY) -4400 + (ID) 2700
Total energy: -361645.0 ( -150.31 by residue)
QMean score : 0.100
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