Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
--------M-FDWLTNSTAIIIILPVVVFILTMFFSSFK----LKKSQRRIMLAADLSTIFLII-AVHFFMIVLFNRSFLLYILLFLFILGIVIVVTAAKKEGEIQFRKI--LRGYWRLCFFIFALLY--VALYLYGIVYSLVLMF
1YQ5 Chain:A ((197-340))
GGVTDALSLMYSTSTGGPASIAANALTDFDLSGALTVNSVGTGLTKSAAGIQLAAGKSGLYQITMTVKNNTVT--TGNYLLRVKYGSSDFVVACPASSLTAGGTISLLIYCNVLGVVSLDVLKFSLCNDGAALSNYIINITAAKIN
General information:
TITO was launched using:
RESULT:
Template:
1YQ5.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -137244 for 842 contacts (-163.0/contact) +
2D Compatibility (PS) -12402 + (NN) 12560 + (LL) 308
1D Compatibility (HY) 8000 + (ID) 450
Total energy: -129228.0 ( -153.48 by residue)
QMean score : -0.200
(partial model without unconserved sides chains):
PDB file :
Tito_1YQ5.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-1YQ5-query.scw
PDB file :
Tito_Scwrl_1YQ5.pdb
: