Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
VSLEEALLFREATVTDLKSIMNVENAA------------FTVPWTEAAFRNEFIINQYA--------YYLLAIYKEQVVGYAGVWLVLDEGHITNIAIHPDYQGNHYGEALLREMIRVAKERGVVRMTLEVRVSNDVAQGLYKKLGFQDGAIRKNYYPDTKEDALVMWVDL
3K9U Chain:A ((6-144))
---------RKLSIEDLETLIEVARESWKWTYAGIYSEEYIESWIREKYSKEKLLNEIVRSQSNLDILFLGAFADSTLIGFIELKIIANKAELLRLYLKPEYTHKKIGKTLLLEAEKIMKKKGILECRLYVHRQNSVGFSFYYKNGFK-----------------------
General information:
TITO was launched using:
RESULT:
Template:
3K9U.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -82979 for 772 contacts (-107.5/contact) +
2D Compatibility (PS) -12748 + (NN) -3914 + (LL) 2640
1D Compatibility (HY) -11200 + (ID) 1300
Total energy: -109501.0 ( -141.84 by residue)
QMean score : 0.499
(partial model without unconserved sides chains):
PDB file :
Tito_3K9U.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-3K9U-query.scw
PDB file :
Tito_Scwrl_3K9U.pdb
: