Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
| Query sequence | MFQLKANGTDVKTEVISGFTTFLTMVYIVVVNPAILSAAGVPFNTVFMATIISAVIGTLWMAIFANYPIAIAPGLGMNAYFVTVVTTQKLDYSVAFAAVFVAGIIFLLLSLTPLREKIIEAIPHNLKAGITAGIGLFIAFLGFRMTGII--VSNDSNLVGLGDLHSKEAILAIVGLLITLIL---LALNVKGALFIGMIATGIIAFITGELKFTDGIVKLPPMPEFVFTNPIHAFGDVMSYGLYAVVLSFLLITIFDTTG--TMIGVAKKAGLMKGESLPNAKQALMADAVATSVGSM---FGTTPTSAYIES--SAGVATGGRTGLTTLTVAILFMVSAFFAPLVGAVSGISAITAPALIVVGSMMIGAVKEIDWDTLDEAFPAFLVILAMPLTSSIAIGLAFGFISYPVLKVFTGKWRELNWFLIVIAVLFFILVAFLPH--- |
| 4V1S Chain:A ((37-395)) | -PGVEIGNND--------YYTWCKETLSVIDKDLKIS--------------------------------------GTHSYYENQDRSQVS---------FIWGNIFLLYTYT----EGISLSKSEWSDALMNCFLNFDNYWHPNYKGIAGYATLPTSAEKVPDRFYDENGWTAIGLCDAYLATQNNSYLEKAKGALAFSLSGEDNVLGGGIYFQETFVSLP----------------VQKNTICSAVTMLSCMKLYEITQDRQYLDAAIRINDWTVENLLDKSDNLLWDAKMVADGSVNTQKWSYNAGFMIRSWLKMYQATKDEKYLSQAKATLASSEAKWYNSINGALNDP---GYFAFSIIDSWFDMYDTDKNTVWLTKAFHAINFIHNKLRDGNGRYPEHWG-------TPTTSNLEKYDLRFSTVAAYMYMRAANYKRILN |
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General information:
TITO was launched using:
| RESULT:
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Template: 4V1S.pdb
Alignment : align.pir
Tito was launched with SMD and SCWRL
Tito text output
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3D Compatibility (PKB) -434947 for 3026 contacts (-143.7/contact) +
2D Compatibility (PS) -35190 + (NN) -5671 + (LL) 6932
1D Compatibility (HY) -7200 + (ID) 2900
Total energy: -478976.0 ( -158.29 by residue)
QMean score : 0.224
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