Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MKKHIVLIVVACITVIAVFMYIVQINNSELKYQNRAQIKIASQMASQNEQTDNSIVSEITYK
2RMY Chain:A ((1-34))
--------------------------MAEMGSKGVTAGKIASNVQKKLTRAQEKVLQKLY--
General information:
TITO was launched using:
RESULT:
Template:
2RMY.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) 4693 for 134 contacts (35.0/contact) +
2D Compatibility (PS) -3535 + (NN) 738 + (LL) 3956
1D Compatibility (HY) -1600 + (ID) 250
Total energy: 4002.0 ( 29.87 by residue)
QMean score : 0.479
(partial model without unconserved sides chains):
PDB file :
Tito_2RMY.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-2RMY-query.scw
PDB file :
Tito_Scwrl_2RMY.pdb
: