Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MANVHVINHPLVQHKLTIIRDKNTGTKAFRELVDEVATLMAYEITRDMELEDIQVETPL--QTTTAKTLTGKKLGIVPILRAGLGMQDGILKLIPAAKVGHVGLYRDH-------DTLEPVEYFVKLPSDVEERL--FIVVDPMLATGGSAIMAIDCLKKRGARNMKFMCLVAAPEGVKALQDAHPDVEIYVAGLDEKLDENGYIRPGLGDAGDRLFGTK
1VST Chain:A ((3-216))
---LYVIDKPITLHILTQLRDKYTDQINFRKNLVRLGRILGYEISNTLDYEIVEVETPLGVKTKGVDITDLNNIVIINILRAAVPLVEGLLKAFPKARQGVIGASRVEVDGKEVPKDMDVYIYYKKIP-DIRAKVDNVIIADPMIATASTMLKVLEEVVKANPKRIYIVSIISSEYGVNKILSKYPFIYLFTVAIDPELNNKGYILPGLGDAGDRAFG--
General information:
TITO was launched using:
RESULT:
Template:
1VST.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -174499 for 1632 contacts (-106.9/contact) +
2D Compatibility (PS) -21624 + (NN) -2974 + (LL) 360
1D Compatibility (HY) -18000 + (ID) 3250
Total energy: -219987.0 ( -134.80 by residue)
QMean score : 0.489
(partial model without unconserved sides chains):
PDB file :
Tito_1VST.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-1VST-query.scw
PDB file :
Tito_Scwrl_1VST.pdb
: