Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MTANQMERKKVTIHITNVIRQMDAEEKSDMSVSGVFYRDKGNRYLHYEEKQLAGTIRTVLKIADNELLLMRSGAVNMRMHFFRDNRRSTASVDSGAGKLQLESELVSMEELYENKPDVLSEVAFQYDLLSHGEYIGSYTVLMKIEEDAE
3WAF Chain:A ((224-285))
---------------------------------------------------------------------FRRAGYRLGMHHFRDGDAGNLALVTGAGLLKTSKNLAAATRFLTY---LLSPQAQQYFVGNIGEY---------------
General information:
TITO was launched using:
RESULT:
Template:
3WAF.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -667 for 251 contacts (-2.7/contact) +
2D Compatibility (PS) -6478 + (NN) -1536 + (LL) 7064
1D Compatibility (HY) -3200 + (ID) 950
Total energy: -5767.0 ( -22.98 by residue)
QMean score : -0.094
(partial model without unconserved sides chains):
PDB file :
Tito_3WAF.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-3WAF-query.scw
PDB file :
Tito_Scwrl_3WAF.pdb
: