Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MSEKQVALYIAVSLDGYIADENGSVEWLESIDSEGDAGYEAFFDNV----------DTVVMGRTTYQQI----------FSLTDTFPYSKKD--VYVFSNTKAGTKDEYADFVAGTVDTWLNNIDGEKIWLVGGAKLVQQFLKERAIDRFVITIAPIILGKGIPLFEEDQEHALELEEVTRFGQFAQLTYKNLEEN
4Q0D Chain:E ((3-145))
--EKNVSIVVAASVLSSGIGINGQLPWSISEDLK-------FFSKITNNKCDSNKKNALIMGRKTWDSIGRRPLKNRIIVVISSSLPQDEADPNVVVFRN------------LEDSIENLMNDDSIENIFVCGGESIYRDALKDNFVDRIYLT-------------------------------------------
General information:
TITO was launched using:
RESULT:
Template:
4Q0D.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -67304 for 721 contacts (-93.3/contact) +
2D Compatibility (PS) -12248 + (NN) -4387 + (LL) 4288
1D Compatibility (HY) -11600 + (ID) 1650
Total energy: -92901.0 ( -128.85 by residue)
QMean score : 0.384
(partial model without unconserved sides chains):
PDB file :
Tito_4Q0D.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-4Q0D-query.scw
PDB file :
Tito_Scwrl_4Q0D.pdb
: