Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
LKLVLMGLPGAGKGTQAEQIVEKYNIPHISTGDMFRAAMKNNTELGRKAKSFMDNGDLVPDEVTNGIVRERLSEDDAKDGFLLDGFPRTVEQAQELENILSDLGTELDAVINIDVEKDVLMKRLTGRWICRTCGKTYHEIYNPPKVPGKCDLDGGELYQRDDDKKETVEKRLNVNMKQTKPLLDFYSEKGKLHNINGEQEIKDVFVDVEKILASF
1S3G Chain:A ((1-212))
MNIVLMGLPGAGKGTQADRIVEKYGTPHISTGDMFRAAIQEGTELGVKAKSFMDQGALVPDEVTIGIVRERLSKSDCDNGFLLDGFPRTVPQAEALDQLLADMGRKIEHVLNIQVEKEELIARLTGRRICKVCGTSYHLLFNPPQVEGKCDKDGGELYQRADDNPDTVTNRLEVNMNQTAPLLAFYDSKEVLVNINGQKDIKDVFKDLDVIL---
General information:
TITO was launched using:
RESULT:
Template:
1S3G.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -58311 for 1633 contacts (-35.7/contact) +
2D Compatibility (PS) -23342 + (NN) -15669 + (LL) 248
1D Compatibility (HY) -24000 + (ID) 7000
Total energy: -128074.0 ( -78.43 by residue)
QMean score : 0.561
(partial model without unconserved sides chains):
PDB file :
Tito_1S3G.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-1S3G-query.scw
PDB file :
Tito_Scwrl_1S3G.pdb
: