Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MKLHELKPSEGSRKERNRVGRGTGSGNGKTSGRGHKGQKARSGGGVRLGFEGGQLPLFRRIPKRGFTNINRKEFAIVNLDVLNRFEDGTEVTPELLVETGIIRNEKSGIKILSNGNIEKKLTVKANKFSAAAKEAIEAAGGKTEVI
1XBP Chain:J ((4-139))
---HDLKPTPGSRKDRKRVGRGPG-GTDKTAGRGHKGQKSRSGAGKGAFFEGGRSRLIARLPKRGFNNVG-TTYEVVKLSQLQDLED-TTFDRDTLEAYRLVRRKNRPVKLLASGEISRAVTVHVDAASAAAIKAVEAAGGR----
General information:
TITO was launched using:
RESULT:
Template:
1XBP.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) 1562993 for 6903 contacts (226.4/contact) +
2D Compatibility (PS) -12565 + (NN) -4028 + (LL) 608
1D Compatibility (HY) 1600 + (ID) 900
Total energy: 1547708.0 ( 224.21 by residue)
QMean score : ?
(partial model without unconserved sides chains):
PDB file :
Tito_1XBP.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-1XBP-query.scw
PDB file :
Tito_Scwrl_1XBP.pdb
: