Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MVMTDPIADFLTRIRNANMVKHDKLELPASKIKKEIAEILKREGFIRDVEYIEDDNAGTIRVFLKYGAT-------GERVITGLKRISKPGLRVYAKSTEVPKVLNGLGIAIVSTSQGVLTDKEARAKQVGGEVLAYVW
1J5E Chain:H ((1-138))
-MLTDPIADMLTRIRNATRVYKESTDVPASRFKEEILRILAREGFIKGYERVDVDGKPYLRVYLKYGPRRQGPDPRPEQVIHHIRRISKPGRRVYVGVKEIPRVRRGLGIAILSTSKGVLTDREARKLGVGGELICEVW
General information:
TITO was launched using:
RESULT:
Template:
1J5E.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -73226 for 958 contacts (-76.4/contact) +
2D Compatibility (PS) -14006 + (NN) -2859 + (LL) 208
1D Compatibility (HY) -13600 + (ID) 3650
Total energy: -107133.0 ( -111.83 by residue)
QMean score : 0.495
(partial model without unconserved sides chains):
PDB file :
Tito_1J5E.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-1J5E-query.scw
PDB file :
Tito_Scwrl_1J5E.pdb
: