Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MSFLDKELVNLHGSAKNADEAIVQAGELLVNAGYVSEQYVEKMVESYHENGAYFVIAPQIAIPHARPTDGVENSAVSLVVLKDGVNFGHAANDPVRLVFGL--AATSSEAHLKVIQKIVSLLSNNDNIEKMIHSEDYQAIGELVEG
1A6J Chain:A ((12-140))
-SVLNRECTRSRVHCQSKKRALEIISELAAKQLSLPPQVVFEAILTREKMGSTG-IGNGIAIPHGKLEEDTLRAVGVFVQLETPIAFDAIDNQPVDLLFALLVPADQTKTHLHTLSLVAKRLADKTICRRL---------------
General information:
TITO was launched using:
RESULT:
Template:
1A6J.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -89543 for 958 contacts (-93.5/contact) +
2D Compatibility (PS) -13911 + (NN) -6257 + (LL) 1440
1D Compatibility (HY) -4800 + (ID) 1400
Total energy: -114471.0 ( -119.49 by residue)
QMean score : 0.563
(partial model without unconserved sides chains):
PDB file :
Tito_1A6J.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-1A6J-query.scw
PDB file :
Tito_Scwrl_1A6J.pdb
: