Modeling by threading (Tito software) Unconserved sides chains calculation (Scwrl software) Evaluation (QMean software)
Input alignment information:
Query sequence | LKAVVKTNPGYDQMELKDVEEPQVYGDKVKIKVAFTGICGSDIHTFK----GEYKNPTTPVTLGHEFSGVVVEVGPDVTSIKVGDRVTSETTFETCGECIYCKEHDYNLCSNRRGIGTQA-NGSFAEFVLSREESCHVLDERISLEAAALTEPLACCVHSALEKTTIRPDDTVLVFGPGPIGLLLAQVVKAQGATVIMAGITKDSDRLRLAKELGMDRIVDTLKEDLAEVVLGMTGGYGA--ERVFDCSGAVPAVNQGLPLTKKKGDFVQVGLFAEKKNAIDEESIIQREIAYIGSRSQKPSSWILALDLLANGKIDTDKMITKVYGLDDWREAFEAVMAGNEIKVLVKS |
3QE3 Chain:A ((9-347)) | --SLVVHGPGDLRLENYPIPEPG--PNEVLLKMHSVGICGSDVHYWQHGRIGDFVV-KKPMVLGHEASGTVVKVGSLVRHLQPGDRVAIQPGAPRQTD-EFCKIGRYNLSPTIFFCATPPDDGNLCRFYKHNANFCYKLPDNVTFEEGALIEPLSVGIH-ACRRAGVTLGNKVLVCGAGPIGLVNLLAAKAMGAAQVVV-TDLSASRLSKAKEVGADFILEISNESPEEIAKKVEGLLGSKPEVTIECTGVETSIQAGIYATHSGGTLVLVGLGSE-MTSVPLVHAATREVDIKGV-FRYCNTWPMAISMLASKSVNVKPLVTHRFPLEKALEAFETSKKGLGLKVMIK- |
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General information:
TITO was launched using:
| RESULT:
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Template: 3QE3.pdb
Alignment : align.pir
Tito was launched with SMD and SCWRL
Tito text output
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3D Compatibility (PKB) -151673 for 2926 contacts (-51.8/contact) +
2D Compatibility (PS) -35690 + (NN) -13465 + (LL) 376
1D Compatibility (HY) -17600 + (ID) 5150
Total energy: -223202.0 ( -76.28 by residue)
QMean score : 0.431
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