Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MNSKRLVLIVEDEDGISNFISAVLTASDYSVIKAVNGKEALEQTASHSPDVVLLDLGLPDMEGLDVLRDIRVWSKVPIIVVSARDHEREKVTALDLGADDYITKPFGTSELLARIRTALRHIQPSSKESPNDHIIRIQDLYIDDDRRLVKMDDTEIHFTPIEYKILLLLARHAGKVLTHDFIIREIWGPYPSENQALRVNMSNIRRKIEKNPAEPAYILTEVGVGYRMAEE
4L85 Chain:A ((6-120))
------VLIVEDEQAIRRFLRTALEGDGMRVFEAETLQRGLLEAATRKPDLIILALG-----GIEFIRDLRQWSAVPVIVLSARSEESDKIAALDAGADDYLSKPFGIGELQARLRVALRR--------------------------------------------------------------------------------------------------------------
General information:
TITO was launched using:
RESULT:
Template:
4L85.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -82994 for 807 contacts (-102.8/contact) +
2D Compatibility (PS) -12427 + (NN) -7942 + (LL) 8732
1D Compatibility (HY) -12000 + (ID) 2700
Total energy: -109331.0 ( -135.48 by residue)
QMean score : 0.670
(partial model without unconserved sides chains):
PDB file :
Tito_4L85.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-4L85-query.scw
PDB file :
Tito_Scwrl_4L85.pdb
: