Modeling by threading (Tito software) Unconserved sides chains calculation (Scwrl software) Evaluation (QMean software)
Input alignment information:
Query sequence | MPNIKEIAKLAGVSVTTVSRVLNNHPYVAEEKRVRVQAVIDELDYSPNRSAMDLARGKTNTVGVIIPYNDHPWFDKIVNGILEVAFKNRYSVTLFPTGYDPKEEEKYLMRLKTKQVDGLIITSRANNWDVILPYLAYGPIIACEYVESKEVSCSYIDRV--KAYRAGF---QFLEDEGYKKVAFTAGRASRESTS--TYGKINAYEQVFGPVGDNRFLSECYTLEDGLKAGEHFFAAGKDWPDAIYANGDEVAAGVMYHVKKLGLRVPEDVAILGQENLPIGKVL--EITTLDHNLKKLGENAFTIF------EQGKLQRIKVEHELIRRKTV |
1JFT Chain:A ((2-330)) | --TIKDVAKRANVSTTTVSHVINKTRFVAEETRNAVWAAIKELHYSPSAVARSLKVNHTKSIGLLATSSEAAYFAEIIEAVEKNCFQKGYTLILGNAWNNLEKQRAYLSMMAQKRVDGLLVMC-SEYPEPLLAMLEEYRHIPMVVMDAGEAKADFTDAVIDNAFEGGYMAGRYLIERGHREIGVIPGPLERNTGAGRLAGFMKAMEEAMIKVPESWIVQGDFEPESGYRAMQQILSQ-PHRPTAVFCGGDIMAMGALCAADEMGLRVPQDVSLIGYDNVRNARYFTPALTTIHQPKDSLGETAFNMLLDRIVNKREEPQSIEVHPRLIERRSV |
|
General information:
TITO was launched using:
| RESULT:
|
Template: 1JFT.pdb
Alignment : align.pir
Tito was launched with SMD and SCWRL
Tito text output
|
3D Compatibility (PKB) -140647 for 2530 contacts (-55.6/contact) +
2D Compatibility (PS) -34116 + (NN) -17131 + (LL) -4
1D Compatibility (HY) -21200 + (ID) 4500
Total energy: -217598.0 ( -86.01 by residue)
QMean score : 0.439
|
|
|