Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MRGYYDEISFDVNTTAKKMHLFLLRSIASYDVTPEQWSVLEGIEANEP--ISQKEIALWTKKDTPTVNRIVDVLLRKELIVREISTEDRRISLLSLTEKGRKETNELRDIVEVSCEKMFAGVERADLEQFTAILKNISTNIE
4LD5 Chain:A ((22-139))
------------------------QKLEQFDITNEQGHTLGYLYAHQQDGLTQNDIAKALQRTGPTVSNLLRNLERKKLIYRYVDAQDTRRKNIGLTTSGIKLVEAFTSIFDEMEQTLVSQLSEEENEQMKANLTKMLSSLQ
General information:
TITO was launched using:
RESULT:
Template:
4LD5.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -29781 for 718 contacts (-41.5/contact) +
2D Compatibility (PS) -12326 + (NN) -3804 + (LL) 1980
1D Compatibility (HY) -6000 + (ID) 1450
Total energy: -51381.0 ( -71.56 by residue)
QMean score : 0.579
(partial model without unconserved sides chains):
PDB file :
Tito_4LD5.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-4LD5-query.scw
PDB file :
Tito_Scwrl_4LD5.pdb
: