Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
| Query sequence | MNLFKTIGIIGGGQLGQMMAIAAIYMGHKVITLDPASDCSASRVSEVIVAPYDDVEALGQLAARCDVLTYEFENVDADGLDAVVSAGQLPQGTDLLRISQNRIFEKDFLANKAGVTVAPYKVVTSSLDLEGF--DLTKTYVLKTATGGYDGHGQKVIRSAEDLPEAQQLANSAE--CVLEEFVDFDLEISVIVSGNGQ-DVTVFPVQENIHRNNILSKTIVPARISDQLADKAKKMAVQIAKELQLSGTLCVEMFVTADDIIVNEIAPRPHNSGHYSIEACDFSQFDTHILGVLGQPLPPIKLHAPAVMLNVLGQHVQQAIDYVAENPSAHLHIYGKLEAKHNRKMGHVTVFTEDADEVEEF |
| 4M9U Chain:A ((3-350)) | ------IGIIGAGQLARMLSLAGTPLGLEFHCLGKNGDCAEEVVKTVTDIELTKVNDVVAWAKQFDVITFENENISHELIKAINHEVSVYPSAKAIAISQDRLLEKSFMQDH-GIATAKFVNIDSLAKLQSAVDDHGLPAILKTRRFGYDGKGQFVIRSQEDITKAWDVLKDAPDGLIYEAFVDFDYEVSQICTADLKGNIAFYPLARNTHKQGIIVESEAPFE-NVVLAEKAQQIAKILVKEFAYVGTLAIEFFVKGDELIVNEIAPRVHNSGHWSIDGAVTSQFENHVRAIAGLILGDTT-SRKTVMLNCIGG--MPATKDLAALDRVKIHSYNK-EPRKGRKVGHLNLNLN--DETDEY |
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General information:
TITO was launched using:
| RESULT:
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Template: 4M9U.pdb
Alignment : align.pir
Tito was launched with SMD and SCWRL
Tito text output
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3D Compatibility (PKB) -172509 for 2895 contacts (-59.6/contact) +
2D Compatibility (PS) -38337 + (NN) -15575 + (LL) 1556
1D Compatibility (HY) -24000 + (ID) 6050
Total energy: -254915.0 ( -88.05 by residue)
QMean score : 0.512
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