Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MNLLIMGLPGAGKGTQAAKIVEEFGVAHISTGDMFRAAMANQTEMGRLAKSYIDKGELVPDEVTNGIVKERLAEDDIAEKGFLLDGYPRTIEQAHALDATLEELGLRLDGVINIKVDPSCLIERLSGRIINRKTGETFHKVFNPP-----VDYKEEDYYQREDDKPETVKRRLDVNIAQGEPILEHYRKLGLVTDIEGNQEITEVFADVEKALLELK
1ZIN Chain:A ((1-212))
MNLVLMGLPGAGKGTQAEKIVAAYGIPHISTGDMFRAAMKEGTPLGLQAKQYMDRGDLVPDEVTIGIVRERLSKDD-CQNGFLLDGFPRTVAQAEALETMLADIGRKLDYVIHIDVRQDVLMERLTGRRICRNCGATYHLIFHPPAKPGVCDKCGGELYQRADDNEATVANRLEVNMKQMKPLVDFYEQKGYLRNINGEQDMEKVFADIRELLGGLA
General information:
TITO was launched using:
RESULT:
Template:
1ZIN.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -68897 for 1607 contacts (-42.9/contact) +
2D Compatibility (PS) -22652 + (NN) -11047 + (LL) 204
1D Compatibility (HY) -22800 + (ID) 5600
Total energy: -130792.0 ( -81.39 by residue)
QMean score : 0.550
(partial model without unconserved sides chains):
PDB file :
Tito_1ZIN.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-1ZIN-query.scw
PDB file :
Tito_Scwrl_1ZIN.pdb
: