Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
----MRKEKTSQLVQLAIVTAISIVLGMFISIPTPTGFLTLLDAGIFFAAFYFGKKEGAVVGALAGF--------------------------LIDLLKGYPNWMFFSLLIHGAQGYLAGLPGRRRLLGLISATLVMVLGYAIAS-----GLMYGWGAVLPDIPGNIMQNMVGMVVGFALNKSLERVKK-
4RFS Chain:S ((3-200))
RHKTFRLVVDALLMAIVLLQNLVPFLG---YIPFGPFSMTLIGLTVIVAGSALGPRDGLLIGGFWGLITFVRAFTWPSSPVAPLIFTNPLISILPRLLMGLVAGSLYLWGRHRQWSMRQAMQVAAGCAALTNTVLVLGLVFLFYQTPAVLGYVLMISLFTNGIPELILDVLVAPLIAMPLRRQWERLKPQ
General information:
TITO was launched using:
RESULT:
Template:
4RFS.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -93863 for 1208 contacts (-77.7/contact) +
2D Compatibility (PS) -15639 + (NN) -4923 + (LL) 544
1D Compatibility (HY) -15600 + (ID) 1550
Total energy: -131031.0 ( -108.47 by residue)
QMean score : 0.290
(partial model without unconserved sides chains):
PDB file :
Tito_4RFS.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-4RFS-query.scw
PDB file :
Tito_Scwrl_4RFS.pdb
: