Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
| Query sequence | -------------------------------------------MIPFTIEYIFVLIGAFLLSIILTPIIRVISLKVGAVDKPN----ARRINKVPMPSSGGLA--IFLSFVVTTLFFMPMAASRHFI------EVSYFHYILPVIIGGLVVTTTGFIDDIFELRPR----YKM-----------------LGIIIAAV-------IIWKFT--------------HFRFDSFKIPIGGPLLEFGPILTFFL--TVLWIISI-TNAINLIDG----LDGLVSG-VSIISLATMAVVSYFF-LPKI------DFFLTLTIVILIASIVGFFPYNYHPAIIYLGDAG--ALFIGFMIGVLSLQG-LKNSTAVAVITPVIILGV---------PILDTAVAIVRRKLSGKKISEADKMHLHHRLLSMGFTHRGAVLVVYGIAIIFSLIALL----LNVSSRIGGIFLLL-------ALLLAMEIFIEGLNIWGENRTPLFNLLKFIGNSDYRQSVIAKYSDKHQK----------------- |
| 3VWA Chain:A ((1-540)) | PLHMSISNFQFPYTIEETAITETALWQCFDGTRKADSLPVTVFKAKRSPENESLILNAVHKSKILKIPGLCTVLETFDSDPQSTFIVTERVVPFPWDNLGSLSQNKFGVELGISQLLATLGFLKNFVLGTLSKDSVFINIKGEWVLFGLELCSSKEGLSAFEFASRARSYYNIIGSQLPCEDPNTIDSMGLGLLIKSLMAPSCLPKDWIVNVNMISDGKITIENFRKRLENTETWRSNPLINFYQELRELHIKDPQGKLVVMSNLENLYLESREIFRNLTPGMIENFIIPELCEIIKLLMTQSISSNASHKLVPFLAIVLDLTSETNTFPVGFNDLITQSFKLPDRQVRFLLLIYLPKLIGPLSKSEISSRIYPHFIQGLTDSDATLRLQTLKTIPCIVSC------LTERQLNNELLRFLAKTQVDSDVEIRTWTVIIISKISTILSTSVGNRSNILATAFTKSLKDPQVKPRLAALYGLEKSIELFDVNTIAN-KILTVIAPGLLDKSPIVRGRAKILFEEYLEKLEKEAQLIQTN |
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General information:
TITO was launched using:
| RESULT:
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Template: 3VWA.pdb
Alignment : align.pir
Tito was launched with SMD and SCWRL
Tito text output
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3D Compatibility (PKB) -379985 for 2666 contacts (-142.5/contact) +
2D Compatibility (PS) -38280 + (NN) -472 + (LL) 300
1D Compatibility (HY) -9600 + (ID) 3550
Total energy: -431587.0 ( -161.89 by residue)
QMean score : 0.267
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