Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MIKINFPILDEPLVLSNATILTIEDVSVYSSLVKHFYQYDVDEHLKLFDDKQKSLKATELMLVTDILGYDVNSAPILKLIHGDLENQFNEKPEVKSMVEKLAATITELIAFECLENELDLEYDEITILELIKALGVKIETQSDTIFEKCFEIIQVYHYLTKKNLLVFVNSGAYLTKDEVIKLCEYINLMQKSVLFLEPRRLYDLPQYVIDKDYFLIGENMV
3S5U Chain:C ((3-215))
--RVNFS--EEPIEIEKATFLTIKDVQSFAHLVKLIYQYDGE-ELKL-----KGLKPTELFVVTDILGYDVNSAATLKLIYGDLEAQLNDKPEVKSMIEKLTGTISQLIGYELLEHEMDLEEDGIIVQELFKALGIKIETTSDTIFEKVMEITQVHRYLSKKKLLIFINACTYLTEDEVQQVVEYISLNNVDVLFLEQRVVQNRFQYILDENFYLSYEKA-
General information:
TITO was launched using:
RESULT:
Template:
3S5U.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -135749 for 1320 contacts (-102.8/contact) +
2D Compatibility (PS) -21945 + (NN) -6489 + (LL) 1264
1D Compatibility (HY) -27600 + (ID) 6050
Total energy: -196569.0 ( -148.92 by residue)
QMean score : 0.521
(partial model without unconserved sides chains):
PDB file :
Tito_3S5U.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-3S5U-query.scw
PDB file :
Tito_Scwrl_3S5U.pdb
: