Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MTTVYLSLGSNIGDRETFLKQALFSIDHLQKTKVAQISAIYETAAWGNTNQEDFFNICCQVETDLAPFELLDYCQEIEKRLKRVRH-EHWGPRTIDIDILLFGNQVINQEDLVVPHPYMTKRAFVLVPLLEIAPQLSLPNGSKLEDYL-----EKLNLGEVHYLKPVE
1EQM Chain:A ((1-156))
-TVAYIAIGSNLASPLEQVNAALKALGDIPESHILTVSSFYRTPPLGPQDQPDYLNAAVALETSLAPEELLNHTQRIELQQGRVRKAERWGPRTLDLDIMLFGNEVINTERLTVPHYDMKNRGFMLWPLFEIAPELVFPDGEMLRQILHTRAFDKLNKW---------
General information:
TITO was launched using:
RESULT:
Template:
1EQM.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -129338 for 1126 contacts (-114.9/contact) +
2D Compatibility (PS) -15753 + (NN) -4081 + (LL) 744
1D Compatibility (HY) -14400 + (ID) 3350
Total energy: -166178.0 ( -147.58 by residue)
QMean score : 0.611
(partial model without unconserved sides chains):
PDB file :
Tito_1EQM.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-1EQM-query.scw
PDB file :
Tito_Scwrl_1EQM.pdb
: