Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MNIKKMLFGSYDYHKISEDGKEKLSIKIDSGWVIGLSILGLIGWLVLK
3U8P Chain:A ((142-165))
-----------AYHQKYRGGKLTLKFICTTGKLPVPWPTLVTTLVQCF
General information:
TITO was launched using:
RESULT:
Template:
3U8P.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) 3256 for 68 contacts (47.9/contact) +
2D Compatibility (PS) -2517 + (NN) -30 + (LL) 868
1D Compatibility (HY) -800 + (ID) 300
Total energy: 477.0 ( 7.01 by residue)
QMean score : 0.060
(partial model without unconserved sides chains):
PDB file :
Tito_3U8P.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-3U8P-query.scw
PDB file :
Tito_Scwrl_3U8P.pdb
: