Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MDELKKLAGVTAAKYVKNGMIVGLGTGSTAYFFVEEIGRRVKEEGLQVVGVTTSNRTTEQARGLGIPLKSADDIDVIDVTVDGADEVDPDFNGIKGGGGALLMEKIVATPTKEYIWVVDESKLVETLGAFKLPVEVVRYGSERLFRVFKSKGYCPSFRETEGDRFITDMGNYIIDLDLKKIEDPKQLANELDHTVGVVEHGLFNSMVNKVIVAGKNGLDILEK
1O8B Chain:A ((23-198))
--------------------IVGVGTGST--------------EG----AVSSSDA------------FDLNEVDSLGIYVDGADEINGHMQMIKGGG-ALTREKIIASVAEKFICIADASKQVDILGKFPLPVEVIPMARSAVARQLVKLGGRPEYRQG----VVTDNGNVILDVHGMEILDPIAMENAINAIPGVVTVGLFANRGADVALIGTPDGVKTIV
General information:
TITO was launched using:
RESULT:
Template:
1O8B.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -33792 for 1184 contacts (-28.5/contact) +
2D Compatibility (PS) -15765 + (NN) -5915 + (LL) 4188
1D Compatibility (HY) -12000 + (ID) 3150
Total energy: -66434.0 ( -56.11 by residue)
QMean score : 0.479
(partial model without unconserved sides chains):
PDB file :
Tito_1O8B.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-1O8B-query.scw
PDB file :
Tito_Scwrl_1O8B.pdb
: