Modeling by threading (Tito software) Unconserved sides chains calculation (Scwrl software) Evaluation (QMean software)
Input alignment information:
Query sequence | MIDYIDLALTYGGFTSLDKVYLEKKLDGLSKQQRLDFITPPPSVINAYFAEIYQKQGPEAATDYYFDLSKALGLFPKHLSFDEEKPFIRLNLSGKSFGFAYLNDQEEASVFSEVKEVITPQLLLEIAQIFPQYKVYQDRSGIRMAKIDFDETESQNITPETSLLGNVLQLKKDIIKITSFNQEELLELVKTKSGKYYYSSQGRESVIYIDTKSTN |
3DPJ Chain:A ((29-57)) | -----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TSFVDISAAVGISRGNFYYHFKTKDEILAEVIRLRL |
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General information:
TITO was launched using:
| RESULT:
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Template: 3DPJ.pdb
Alignment : align.pir
Tito was launched with SMD and SCWRL
Tito text output
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3D Compatibility (PKB) -3050 for 136 contacts (-22.4/contact) +
2D Compatibility (PS) -3038 + (NN) -258 + (LL) 12444
1D Compatibility (HY) -1200 + (ID) 200
Total energy: 4698.0 ( 34.54 by residue)
QMean score : 0.331
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