Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MSRKVRRHFTDDFKQQIVDLY-NV-GRKRSSLIKVYELTPSTFDKWVRQAKTTGSFK--SVDNLTDEQRELIELRKHNKELEMQLDILKQAAVIMAQKGK
2JN6 Chain:A ((2-88))
----PTKTYSEEFKRDAVALYENSDGASLQQIANDLGINRVTLKNWIIKYGSNHNVQGTTPSAAVSEAEQIRQLKKENALQRARTRHPAESCLEHHHHHH
General information:
TITO was launched using:
RESULT:
Template:
2JN6.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -7592 for 455 contacts (-16.7/contact) +
2D Compatibility (PS) -8487 + (NN) 175 + (LL) 344
1D Compatibility (HY) -400 + (ID) 650
Total energy: -16610.0 ( -36.51 by residue)
QMean score : 0.386
(partial model without unconserved sides chains):
PDB file :
Tito_2JN6.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-2JN6-query.scw
PDB file :
Tito_Scwrl_2JN6.pdb
: