Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
| Query sequence | MTNRKDDHIKYALKYQSPYNSFDDIELIHSSLPKYNVNDIDLSTHFAGQSFEFPFYINAMTGGSEKGKAVNHKLAQVAQATGIVMATGSYSAALKNDED-DSYPTTDLYPDLKLATNIGLDKPLPAAE----STVKAMNPIFLQVHVNVMQELLMPEGEREFHMWRSHLKEYVDNIQCPLILKEVGFGMDLQSIKDAYDIGITTVDISGRGGTSFAYIEN--QRGRDRSYLNTWGQTTAQSLINAQSMMDKMDILASGGIRHPLDMVKCLVLGAKAVG----LSRTVLELVERYPVDDVIAILNSWKEDLRMIMCALNCKKITDLRQVNYILYGQLKEANAK |
| 1VCF Chain:A ((23-326)) | ----------------KTTTGLEGFRLRYQALAGLALSEVDLTTPFLGKTLKAPFLIGAMT---ENGERINLALAEAAEALGVGMMLGSGRILLERPEALRSFRVRKVAPKALLIANLGLAQLRRYGRDDLLRLVEMLEADALAFHVNPLQEAVQ-RGDTDFRGLVERLAELLP-LPFPVMVKEVGHGLSREAALALRDLPLAAVDVAGAGGTSWARVEEWV-------ELCEIGIPTARAILEVREVLPHLPLVASGGVYTGTDGAKALALGADLLAVARPLLRPALEGAER-----VAAWIGDYLEELRTALFAIGARNPKEARGRVERV---------- |
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General information:
TITO was launched using:
| RESULT:
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Template: 1VCF.pdb
Alignment : align.pir
Tito was launched with SMD and SCWRL
Tito text output
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3D Compatibility (PKB) -196348 for 2484 contacts (-79.0/contact) +
2D Compatibility (PS) -30537 + (NN) -18012 + (LL) 1656
1D Compatibility (HY) -14800 + (ID) 4300
Total energy: -262341.0 ( -105.61 by residue)
QMean score : 0.463
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