Modeling by threading (Tito software) Unconserved sides chains calculation (Scwrl software) Evaluation (QMean software)
Input alignment information:
Query sequence | MKTKSQKTSFFSNLSPYLKGYKLLFALAIVLATLSSLTTVIGPDRLKEMTDLMVKGLAGNIDLA-KIGHIAGQLAVLYVLGALVSYLASFIVTTIIQKFAQGMRNAIADKINKIPLSYFDSHTQGDTLSRVTNDVDLMTQSFNQSLVTMVASTVLLIGSLIMMFKTDWHLATTAIISVFSGFALSSIIMVKS-QPLFKKQQMNLANISGYVEEIYSGHNIVTSHNARQQAKSDFQLLNDKLHSSMWKSQFFSGIMMPLMQFIGNFGYVMVCVVGAMLAIKGTITMGTIVAFMTYVRIFTQPIGQIAQGITQLQSASAAMGRVFEFL-NETNMQEDKHKVLNLPKFKGYVSFEHVKFGYSDNK--TIIHDFTSEAQPGQKVAIVGPTGAGKTTIVNLLMRFYDVNSGSISIDDINIQDMKRSQVHDAFSMVLQDIWLFEGTIKENLIF---NQTTISDDEVQEAAKAVGVHHFIMTLPKGYDTVL-DDAVTLSVGQKQLLTIARALLKNSPLLILDEATSSVDTRTEELIQKAMDKLMEGRTSFVIAHRLSTIKNADLILVMKDGNIIEQGSHDVLMSQ-SGFYADLYNSQFESA |
4AYX Chain:A ((21-574)) | ------------------------LAAAVGFLTMSSVISMSAPFFLGKIIDVIYTN--PTVDYSDNLTRLCLGLSAVFLCGAAANAIRVYLMQTSGQRIVNRLRTSLFSSILRQEVAFFDKTRTGELINRLSSDTALLGRSVTENLSDGLRAGAQASVGISMMFFVSPNLATF-VLSVVPPVSIIAVIYGRYLRKLTKVTQDSLAQATQLAEERIGNVRTVRAFGKEMTEIEKYASKVDHVMQLARKEAFARAGFFGATGLSGNLIVLSVLYKGGLLMGSAHMTVGELSSFLMYAFWVGISIGGLSSFYSELMKGLGAGGRLWELLEREPKLPFNEGVILNEKSFQGALEFKNVHFAYPARPEVPIFQDFSLSIPSGSVTALVGPSGSGKSTVLSLLLRLYDPASGTISLDGHDIRQLNPVWLRSKIGTVSQEPILFSCSIAENIAYGADDPSSVTAEEIQRVAEVANAVAFIRNFPQGFNTVVGEKGVLLSGGQKQRIAIARALLKNPKILLLDEATSALDAENEYLVQEALDRLMDGRTVLVIAHRLSTIKNANMVAVLDQGKITEYGKHEELLSKPNG------------- |
|
General information:
TITO was launched using:
| RESULT:
|
Template: 4AYX.pdb
Alignment : align.pir
Tito was launched with SMD and SCWRL
Tito text output
|
3D Compatibility (PKB) -338258 for 3890 contacts (-87.0/contact) +
2D Compatibility (PS) -57843 + (NN) -12625 + (LL) 2788
1D Compatibility (HY) -39600 + (ID) 8150
Total energy: -453688.0 ( -116.63 by residue)
QMean score : 0.417
|
|
|