Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MKIVVPVMPRSLEEAQEIDLSKFDS-VDIIEWRADALPK----DDIINVAPAIFEKFAGHEIIFTLRTTREGGNIVLSDAEYVELIQKINSIYNPDYIDFEYFSHKEVFQEMLEFPN-----LVLSYHNFQETP--ENIMEIFSELTALAPRVVKIAVMPKNEQDVLDVMNYTRGFKTINPDQVYATVSMSKIGRISRFAGDVTGSSWTFAYLDSSIAPGQITISEMKRVKALLDAD
3O1N Chain:A ((41-273))
-KIIVSLMGKTITDVKSEALAYREADFDILEWRVDHFANVTTAESVLEAAGAIREIITDKPLLFTFRSAKEGGEQALTTGQYIDLNRAAVDSGLVDMIDLELFTGDDEVKATVGYAHQHNVAVIMSNHDFHKTPAAEEIVQRLRKMQELGADIPKIAVMPQTKADVLTLLTATVEMQERYADRPIITMSMSKTGVISRLAGEVFGSAATFGAVKKASAPGAISVADLRTVLTILHQA
General information:
TITO was launched using:
RESULT:
Template:
3O1N.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -127651 for 1847 contacts (-69.1/contact) +
2D Compatibility (PS) -24113 + (NN) -10559 + (LL) 208
1D Compatibility (HY) -16800 + (ID) 3500
Total energy: -182415.0 ( -98.76 by residue)
QMean score : 0.506
(partial model without unconserved sides chains):
PDB file :
Tito_3O1N.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-3O1N-query.scw
PDB file :
Tito_Scwrl_3O1N.pdb
: