Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
-MLTSKQRAFLKSEAHSMKPIIQIGKNGLNDQIKTSVRNALDARELIKVTLLQNTDEDIHDVAEVLEDEIGCDTVLKIGRILILYKESARKENRKISVKVKAVKSN
1LN4 Chain:A ((1-98))
MDLSTKQKQHLKGLAHPLKPVVLLGSNGLTEGVLAEIEQALEHHELIKVKIATEDRETKTLIVEAIVRETGACNVQVIGKTLVLYRPT---KERKISLPLE-----
General information:
TITO was launched using:
RESULT:
Template:
1LN4.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -48694 for 670 contacts (-72.7/contact) +
2D Compatibility (PS) -10490 + (NN) -1812 + (LL) 600
1D Compatibility (HY) -6400 + (ID) 1700
Total energy: -68496.0 ( -102.23 by residue)
QMean score : 0.645
(partial model without unconserved sides chains):
PDB file :
Tito_1LN4.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-1LN4-query.scw
PDB file :
Tito_Scwrl_1LN4.pdb
: