Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MINNVVLVGRMTRDAELRYTPSNQAVATFSLAVNRNFKNQ-SGE--READFINCVIWRQQAENLANWAKKGALVGITGRIQTRNYENQQGQRVYVTEVVAESFQLLESRATREGGSPNSYNNGGYNNAPSNNSYSASSQQTPNFSRDESPFGNSNPMDISDDDLPF
1QVC Chain:A ((5-119))
-VNKVILVGNLGQDPEVRYMPNGGAVANITLATSESWRDKATGEMKEQTEWHRVVLFGKLAEVASEYLRKGSQVYIEGQLRTRKWTDQSGQDRYTTEVVVNVGGTMQMLGGRQGGGAPAGGNIGGGQPQGGWGQPQQPQGGN------------------------
General information:
TITO was launched using:
RESULT:
Template:
1QVC.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -49016 for 680 contacts (-72.1/contact) +
2D Compatibility (PS) -12414 + (NN) -5997 + (LL) -340
1D Compatibility (HY) -7200 + (ID) 1900
Total energy: -76867.0 ( -113.04 by residue)
QMean score : 0.702
(partial model without unconserved sides chains):
PDB file :
Tito_1QVC.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-1QVC-query.scw
PDB file :
Tito_Scwrl_1QVC.pdb
: