Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MSAIDKLVKASHLIDMNDIIREGNPTLRKVAEEVTFPLSEKEEI--LGEKMMQFLKHSQDPIMAEKLGLRGGVGLAAPQLDISKRIIAVLVPNVEDAQGNPPKEAYSLQEVMYNPKVVSHSVQDAALSDGEGCLSVDREVPGYVVRHARVTIEYFDKTGEKHRLKLKGYNSIVVQHEIDHIDGIMFYDRINEKNPFAVKEGLLILE
1Y6H Chain:A ((5-169))
------------------ILRMGDPILRKISEPVTEDEIQTKEFKKLIRDMFDTMRHAE------------GVGLAAPQIGILKQIVVVGSEDNERYPGTPDVP----ERIILNP-VITPLTKDTS-GFWEGCLSVP-GMRGYVERPNQIRMQWMDEKGNQFDETIDGYKAIVYQHECDHLQGILYVDRLKDTKLFGFNETLDSSH
General information:
TITO was launched using:
RESULT:
Template:
1Y6H.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -56976 for 1253 contacts (-45.5/contact) +
2D Compatibility (PS) -17265 + (NN) -5826 + (LL) 2804
1D Compatibility (HY) -15200 + (ID) 3050
Total energy: -95513.0 ( -76.23 by residue)
QMean score : 0.393
(partial model without unconserved sides chains):
PDB file :
Tito_1Y6H.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-1Y6H-query.scw
PDB file :
Tito_Scwrl_1Y6H.pdb
: