Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MNTAPFIAIEGPIGAGKTTLATMLSQ-KFGFPMINEIV---------EDNPYLDKFYDNIKEWSFQLEMFFLCHRYK--------QLEDTSDHFLKKGQPVIADYHIYKNVIFAERTLSPHQLEKYKKIYHLLTDDLPKP---NFIIYIKASLPTLLHRIEKRGRPFEKKIETSYLEQLISDYEV-----AIKQLQEADPELTVLTVDGDSKDFVLNKSDFERIAAHVKELIV
3KFX Chain:A ((43-276))
------ISIEGNIAAGKSTFVNILKQLSEDWEVVPEPVARWSNVQSTNGGNVLQMMYEKPERWSFTFQTYACLSRIRAQLASLNGKLKDAEKPVLFFERSVYSDRYIFASNLYESESMNETEWTIYQDWHDWMNNQFGQSLELDGIIYLQATPETCLHRIYLRGRNEEQGIPLEYLEKLHYKHESWLLHRTLKTNFDYLQEVPILTLDVN-EDF---KDKYESLVEKVKEFL-
General information:
TITO was launched using:
RESULT:
Template:
3KFX.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -93708 for 1407 contacts (-66.6/contact) +
2D Compatibility (PS) -20816 + (NN) -11036 + (LL) 768
1D Compatibility (HY) -17600 + (ID) 2850
Total energy: -145242.0 ( -103.23 by residue)
QMean score : 0.423
(partial model without unconserved sides chains):
PDB file :
Tito_3KFX.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-3KFX-query.scw
PDB file :
Tito_Scwrl_3KFX.pdb
: