Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
METNN-HFFYVVKCKDNSWYAGYTNDLHKRVKTHNDGKGAKYTKV--RRPVELIFAESFSTKREAMQAEYYFKKLTRKKKELYIEEKRNSKEAVYVKAPNEL
1YWL Chain:A ((1-96))
MENKKSHYFYVLLCQDGSFYGGYTTEPERRLTEHNSGTGAKYTRLAKRRPVIMIHTEKFETRSEATKAEAAFKKLTRKQKEQYLKTFHLEHHHHHH------
General information:
TITO was launched using:
RESULT:
Template:
1YWL.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -11459 for 526 contacts (-21.8/contact) +
2D Compatibility (PS) -10056 + (NN) -2017 + (LL) 268
1D Compatibility (HY) -4800 + (ID) 2200
Total energy: -30264.0 ( -57.54 by residue)
QMean score : 0.486
(partial model without unconserved sides chains):
PDB file :
Tito_1YWL.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-1YWL-query.scw
PDB file :
Tito_Scwrl_1YWL.pdb
: