Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MSIEVGSKLQGKITGITNFGAFVELPGG-STGLVHISEVADNYVKDINDHLKVGDQVEVKVINVEKDG---KIGLSIKKAKDRPQARPRNDFRPKESFEQKMNKFLKDSEDRLSSLKRNTESKRGGRGARRG
2CQO Chain:A ((19-88))
--------FQGEVAMVTDYGAFIKIPGCRKQGLVHRTHMSSCRVDKPSEIVDVGDKVWVKLIGREMKNDRIKVSLSMK------------------------------------------------------
General information:
TITO was launched using:
RESULT:
Template:
2CQO.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -39212 for 438 contacts (-89.5/contact) +
2D Compatibility (PS) -6943 + (NN) 1162 + (LL) 2536
1D Compatibility (HY) -6400 + (ID) 1250
Total energy: -50107.0 ( -114.40 by residue)
QMean score : 0.761
(partial model without unconserved sides chains):
PDB file :
Tito_2CQO.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-2CQO-query.scw
PDB file :
Tito_Scwrl_2CQO.pdb
: