Modeling by threading (Tito software) Unconserved sides chains calculation (Scwrl software) Evaluation (QMean software)
Input alignment information:
Query sequence | MLKRIVQAFFIIFGGVVGIFLIPELFVLLNIQDIPLITNAYTSAAIGAIIFFLISIWGTEYVVNWVKWIEDSLLKAPVPDLLFGSLGLVFGLIIAYLIVNVIPLDNIPYRIFSTIIPVFLAFFLGYLGFQVGFKKKDELISLFSISARMQKKKGTADEEHEVQDKKLKILDTSVIIDGRIADICQTGFLEGVIVIPQFVLEELQHIADSSDVL---KRNRGRRGLDIL-NRIQKEL---DIEVEIYEGDFEDIQEVDSKLVKLAKLTSGVVVTNDFNLNKVCELQKVAVLNINDLANAVKPVVLPGEEMNVQVIKDGKEHNQGVAYLDDGTMIVVEEGRNYIGKHIDVLVTSVLQTAAGRMIFAKPKLLEKAL |
1V8P Chain:A ((27-157)) | --------------------------------------------------------------------------------------------------------------------------------------------------------------------AVEYLVDASALYALAAHYDKWIK-HREKLAILHLTIYEAGNALWKEARLGRVDWAAASRHLKKVLSSFKVLEDPPLDEVLRVA-VERGLTFYDASYAYVAESSGLVLVTQDRELLAKTKG-AIDVETLLVRLAA--------------------------------------------------------------------------- |
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General information:
TITO was launched using:
| RESULT:
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Template: 1V8P.pdb
Alignment : align.pir
Tito was launched with SMD and SCWRL
Tito text output
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3D Compatibility (PKB) -38689 for 937 contacts (-41.3/contact) +
2D Compatibility (PS) -13112 + (NN) -3665 + (LL) 20268
1D Compatibility (HY) 0 + (ID) 900
Total energy: -36098.0 ( -38.53 by residue)
QMean score : 0.426
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