Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MAKKVVKVVKLQIPAGKANPAPPVGPALGQAGVNIMGFCKEFNARTAD-QAGLIIPVEISVYEDRSFTFITKTPPAAVLLKKAAGIESGSGEPNRNKVATVKRDKVREIAETKMPDLNAADVEAAMRMVEGTARSMGIVIED
3J7Z Chain:I ((A-142))
-AKKVQAYVKLQVAAGMANPSPPVGPALGQQGVNIMEFCKAFNAKTDSIEKGLPIPVVITVYADRSFTFVTKTPPAAVLLKKAAGIKSGSGKPNKDKVGKISRAQLQEIAQTKAADMTGADIEAMTRSIEGTARSMGLVVED
General information:
TITO was launched using:
RESULT:
Template:
3J7Z.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -32806 for 892 contacts (-36.8/contact) +
2D Compatibility (PS) -15132 + (NN) -8546 + (LL) 208
1D Compatibility (HY) -12800 + (ID) 4750
Total energy: -73826.0 ( -82.76 by residue)
QMean score : 0.319
(partial model without unconserved sides chains):
PDB file :
Tito_3J7Z.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-3J7Z-query.scw
PDB file :
Tito_Scwrl_3J7Z.pdb
: